黑棘Diceraeus melacanthus和D.furcatus线粒体基因组分析的进化和系统发育见解（半翅目：Pentatomice）-动脉网

Evolutionary and phylogenetic insights from the mitochondrial genomic analysis of Diceraeus melacanthus and D. furcatus (Hemiptera: Pentatomidae)

Nature 等信源发布 2024-06-04 05:02

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AbstractThe mitochondrial genomes of D. melacanthus and D. furcatus were sequenced and used to investigate the phylogenetic relationships with 54 species of Pentatomidae. Their mitogenomes are 17,197 and 15,444 bp-long, respectively, including 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, and 22/21 transfer RNA genes, with conserved gene arrangement.

摘要对D.melacanthus和D.furcatus的线粒体基因组进行了测序，并用于研究与54种蝽科的系统发育关系。它们的有丝分裂基因组分别长17197和15444 bp，包括13个蛋白质编码基因（PCG），2个核糖体RNA基因和22/21个转移RNA基因，具有保守的基因排列。

Leu, Lys, and Ser were the most common amino acids in their PCGs. PCGs evolutionary analysis indicated their mitogenomes are under purifying selection, and the most conserved genes are from the cytochrome complex, reinforcing their suitability as markers for molecular taxonomy. We identified 490 mtSSRs in 56 Pentatomidae species, with large variation and a positive correlation between mtSSR number and genome size.

Leu，Lys和Ser是其PCG中最常见的氨基酸。PCGs进化分析表明，它们的有丝分裂基因组正在纯化选择中，最保守的基因来自细胞色素复合物，增强了它们作为分子分类学标记的适用性。我们在56种蝽科物种中鉴定出490个mtSSR，变异较大，mtSSR数量与基因组大小呈正相关。

Three mtSSRs were identified in each Diceraeus species. Only the mtSSR in the nad6 (D. melacanthus) and nad4 (D. furcatus) appear to have application as molecular markers for species characterization. Phylogenetic analysis confirmed the monophyly of Pentatomidae. However, our analysis challenged the monophyly of Pentatominae and Podopinae.

在每个Diceraeus物种中鉴定出三个mtSSR。只有nad6（D.melacanthus）和nad4（D.furcatus）中的mtSSR似乎可以用作物种表征的分子标记。系统发育分析证实了蝽科的单系性。然而，我们的分析挑战了Pentatominae和Podopinae的单一性。

We also detected unexpected relationships among some tribes and genera, highlighting the complexity of the internal taxonomic structure of Pentatomidae. Both Diceraeus species were grouped in the same clade with the remaining Carpocorini analyzed..

我们还发现了一些部落和属之间意想不到的关系，突出了蝽科内部分类结构的复杂性。两种Diceraeus物种被分组在同一进化枝中，其余的Carpocorini被分析。。

IntroductionThe green-belly bugs Diceraeus furcatus and D. melacanthus (Hemiptera: Pentatomidae) are important pests of soybean, winter cereal, and especially maize in Brazil1,2,3,4. Their increased abundance is attributed to the agricultural system in practice in Brazil, with the continuous cultivation of maize following soybean harvest.

引言绿腹蝽Diceraeus furcatus和D.melacanthus（半翅目：蝽科）是巴西大豆，冬谷物，尤其是玉米的重要害虫1,2,3,4。它们丰富度的增加归因于巴西的农业系统，大豆收获后玉米的持续种植。

This system provides year-round food and shelter for green-belly bugs and other pests5,6,7. Despite their relevance as agricultural pests, few molecular studies have been conducted on these species8,9, especially concerning their genetic delimitation, given their morphological similarity and considerable phenotypic plasticity10.The identification of some insects is challenging and it requires additional tools, such as the use of integrative diagnostic methods based on molecular, morphological, and paleontological data11.

该系统为绿腹蝽和其他鼠疫提供全年的食物和庇护所5,6,7。尽管它们与农业害虫有关，但鉴于它们的形态相似性和相当大的表型可塑性，对这些物种8,9进行的分子研究很少，特别是关于它们的遗传划界10。一些昆虫的鉴定具有挑战性，需要额外的工具，例如使用基于分子，形态学和古生物学数据的综合诊断方法11。

In recent decades, the use of DNA barcode markers based on a short region of the mitochondrial cytochrome oxidase I gene (cox1) has been the most used molecular tool. The cox1 became widely used for species recognition and delineation in various taxonomic groups12, although it has shown limited application for species delineation in taxonomic groups carrying low intraspecific variability13.The mitochondrial genome (mtDNA) has emerged as a powerful tool for insect diversity and phylogenetic studies, expanding the potential pool of informative marker genes13.

近几十年来，基于线粒体细胞色素氧化酶I基因（cox1）短区域的DNA条形码标记的使用一直是最常用的分子工具。cox1被广泛用于各种分类群的物种识别和描绘12，尽管它在种内变异性较低的分类群中的物种描绘应用有限13。线粒体基因组（mtDNA）已成为昆虫多样性和系统发育研究的有力工具，扩大了潜在的信息标记基因库13。

Its unique features, such as small size14, stable genetic composition15, maternal inheritance16, orthologous genes and low intermolecular recombination rates17, make it suitable for evolutionary studies. mtDNA serves as a source of molecular markers for population genetics, comparative evolution, divergence time analysis18,19,20, and gene rearrangements21,22.

其独特的特征，如小尺寸14，稳定的遗传组成15，母体遗传16，直系同源基因和低分子间重组率17，使其适用于进化研究。mtDNA是群体遗传学，比较进化，分歧时间分析18,19,20和基因重排21,22的分子标记来源。

mtDNA .

线粒体dna。

Four phylogenetic trees were obtained using different analytical methods (ML, CAT + GTR + C4, C60, and BI) of concatenated amino acid sequences of PCGs from 56 species of Pentatomidae (+ 2 outgroup species) (Fig. 9 and 2S). Topology tests (Table 1S) indicated tree topologies produced using CAT + GTR + C4, C60, and BI methods resulted in significant different log-likelihoods (p < 0.05).

使用来自56种蝽科（+2个外群物种）的PCG的串联氨基酸序列的不同分析方法（ML，CAT++GTR++C4，C60和BI）获得了四个系统发育树（图9和2S）。拓扑测试（表1S）表明，使用CAT++GTR++C4，C60和BI方法产生的树拓扑导致显着不同的对数可能性（p<0.05）。

We chose to explore the BI tree due to the highest posterior probability value obtained (Fig. 9). The recovered phylogeny demonstrated that the Pentatomidae family is a monophyletic group with maximum posterior probability support (PP = 1), reinforcing previous reports68,69,123,124,125,126. However, our data challenge the monophyly hypothesis of Pentatominae and Podopinae, as representatives from both subfamilies intermingle, corroborating published findings69.

由于获得的后验概率值最高，我们选择探索双树（图9）。恢复的系统发育表明，蝽科是一个具有最大后验概率支持的单系群（PP = 1），加强了以前的报道68,69123124125126。然而，我们的数据挑战了Pentatominae和Podopinae的单系假说，因为两个亚科的代表混合在一起，证实了已发表的发现69。

Asopinae and Phyllocephalinae formed independent clades (PP = 1), although within Pentatominae. The monophyly and position of Asopinae within Pentatominae have been previously proposed based on morphology124 and molecular taxonomy81,127, highlighting the need for more detailed internal classification, especially because Asopinae is not divided into tribes126,128,129.

Asopinae和Phyllocephalinae形成了独立的进化枝（PP=1），尽管在Pentatominae内。先前已经基于形态学124和分子分类学81127提出了在Pentatominae中Asopinae的单系性和位置，强调需要更详细的内部分类，特别是因为Asopinae不分为部落126128129。

Neojurtina typica (Pentatominae: Pentatomini) is placed as the oldest representative within the family94,95. Other Pentatominae species are also dispersed on the tree, such as Placosternum urus and Piezodorus guildinii, forming sister group relationships with representatives of Phyllocephalinae and Podopinae, respectively (Fig. 9).Figure 9Phylogenetic relationships of tribes within Pentatomidae reconstructed from mtDNA sequences of 13 PCGs using the BI method.

Neojurtina typica（Pentatominae：Pentatomini）是该家族中最古老的代表94,95。其他Pentatominae物种也分布在树上，如Placosternum urus和Piezodorus guildinii，分别与Phyllocephalinae和Podopinae的代表形成姐妹群关系（图9）。图9使用BI方法从13个PCG的mtDNA序列重建的蝽科内部落的系统发育关系。

The numbers on the branches are the posterior probabilities (PP). The length of the branches is proportional t.

分支上的数字是后验概率（PP）。分支的长度与t成正比。

Data availability

数据可用性

The new mitogenomes have been deposited in GenBank at https://www.ncbi.nlm.nih.gov/ under accession numbers PP235949 e PP235950. The other datasets analysed during the current study are available in GenBank, as referenced in the article.

新的有丝分裂基因组已保存在GenBank中https://www.ncbi.nlm.nih.gov/登录号为PP235949 e PP235950。如本文所述，在当前研究期间分析的其他数据集可在GenBank中获得。

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Download referencesAcknowledgementsThe authors acknowledge the Coordination of Higher Education Personnel Improvement (CAPES–CODE 1) for providing a PhD. fellowship to support LCD.Author informationAuthors and AffiliationsInsect Interactions Laboratory, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP, BrazilLilian Cris Dallagnol & Fernando Luís CônsoliAuthorsLilian Cris DallagnolView author publicationsYou can also search for this author in.

下载参考文献致谢作者承认提供博士学位的高等教育人员改进协调（CAPES–代码1）。支持LCD的奖学金。作者信息作者和附属机构圣保罗大学路易斯·德·奎罗斯农业学院，圣保罗大学，皮拉西卡巴，SP，巴西克里斯蒂·达拉尼奥和费尔南多·路易斯·科尼索利亚作者或莉莉安·克里斯蒂·达拉诺维作者出版物你也可以在中搜索这位作者。

PubMed Google ScholarFernando Luís CônsoliView author publicationsYou can also search for this author in

PubMed谷歌学者Fernando Luís Côsoliview作者出版物您也可以在

PubMed Google ScholarContributionsConceptualization: L. C. D. and F. L. C.; data curation: L. C. D.; formal analysis: L. C. D. and F. L. C.; funding acquisition: F. L. C.; investigation: L. C. D. and F. L. C.; methodology: L. C. D. and F. L. C.; project administration: F. L. C.; supervision: F.

PubMed谷歌学术贡献概念：L.C.D.和F.L.C。；数据管理：L.C.D。；形式分析：L.C.D.和F.L.C。；资金获取：F.L.C。；调查：L.C.D.和F.L.C。；方法：L.C.D.和F.L.C。；项目管理：F.L.C。；监督：F。

L. C.; writing original draft: L. C. D. and F. L. C.; writing, review and editing: all authors read and approved the manuscript.Corresponding authorCorrespondence to.

五十、 C。；撰写原稿：L.C.D.和F.L.C。；写作，评论和编辑：所有作者都阅读并批准了手稿。对应作者对应。

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Reprints and permissionsAbout this articleCite this articleDallagnol, L.C., Cônsoli, F.L. Evolutionary and phylogenetic insights from the mitochondrial genomic analysis of Diceraeus melacanthus and D. furcatus (Hemiptera: Pentatomidae).

转载和许可本文引用本文Dallagnol，L.C.，Cônsoli，F.L。来自Diceraeus melacanthus和D.furcatus（半翅目：蝽科）线粒体基因组分析的进化和系统发育见解。

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Sci Rep 1412861（2024）。https://doi.org/10.1038/s41598-024-63584-wDownload引文收到日期：2024年1月23日接受日期：2024年5月30日发布日期：2024年6月4日OI：https://doi.org/10.1038/s41598-024-63584-wShare本文与您共享以下链接的任何人都可以阅读此内容：获取可共享链接对不起，本文目前没有可共享的链接。复制到剪贴板。

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